To demonstrate, we’ll create a probe dictionary corresponding to a real example, a 128-channel probe from Diagnostic Biochips. We’ll assume all channels are used, so ‘chanMap’ will just be the range of integers from 0 to 127. ‘kcoords’ can be set to all zeroes as mentioned above.
Hi! I am using a double sided 128 channel probe from cambridge neurotech (ASSY-325D H7). It is a double sided probe, but I don't know how to corporate this probe map into kilosort, since kilosort only takes the xy coordinates of the probe, right? Any suggestions? Thank you so much!
To test the performance of Kilosort, we developed a realistic simulation framework that uses densely sampled electrical fields from real experiments to generate nonstationary spike waveforms and...
I am using a double sided 128 channel probe from cambridge neurotech (ASSY-325D H7). It is a double sided probe, but I don't know how to corporate this probe map into kilosort, since kilosort only takes the xy coordinates of the probe, right?
We recommend using the latest Kilosort version (which is 3 at the time of writing this documentation) with drift correction enabled. You can use the default settings set by the KilosortWrapper.
Re-using parameters from previous versions of Kilosort will probably not work well. Kilosort4 is a new algorithm, and the main parameters (like the detection thresholds) can affect the results in different ways.
This document provides a high-level introduction to the Kilosort4 spike sorting system, its architecture, entry points, and major components. For installation instructions, see Installation and Setup. For detailed information about the spike sorting pipeline, see Core Spike Sorting Pipeline.
I was wondering if the default probe "linear 16x1" is suitable for a recording that was done with this type of neuronexus probe or do I need to create a different channel map for it?
This is an example electrophysiological recording from the International Brain Laboratory, recorded using a Neuropixels 1.0 probe (all data here, note to use their full datasets you will need to...
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